YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RRFC_ORYSJ
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPLHAVSPA AAAAPPRALS SAARVPQRPG CVPERPNILS SSTNFMSLRA GPMRFYSRPL  60
   61 ILQNSDKRAV LRHATIEEIE AEKSVIEDQA RERMEKAIET VQNNFNTVRT GRANPAMLDR 120
  121 IEVEYYGTPV NLKSIAQINT PDATSLLIQP YDKSSLKLIE KTIVAANLGV TPSNDGEVIR 180
  181 VTVPPLTSDR RKELAKTVAK LAEEGKVAIR NIRRDAIKAY DKLEKEKKLS EDNVKDLSAD 240
  241 LQKVTDEYMK KIEAIQKQKE QELMKI

Type	Start	End	Confidence
Signal Peptide	1	22	0.97
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	266	0.99