YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88598489, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSFSLKGRP SFFEIAFSLG SVMMSMAIVM AGSDVRAHDD VSALETGGAG YFYVGLDYSP  60
   61 AFSKIRDFSI RESNGETKAV YPYLKDGKSV KLESHKFDWN TPDPRIGFKD NMLVAMEGSV 120
  121 GYGIGGARVE LEIGYERFKT KGIRDSGSKE DEADTVYLLA KELAYDVVTG QTDNLAAALA 180
  181 KTSGKDIVQF AKAVEISYPS IDGKVCSGKH AALAANTNAE KKYAVEPANG GTDGSTSQCS 240
  241 GLSNGSAEAA HKYLSKFVSL TGVVEGKNWP TGRSSNNSNS IVVGAPNSNA NAMAKDLVKE 300
  301 LTPEEKTIVA GLLAKTIEGG EVVEIRAVSS TSVMVNACYD LLSEGLGVVP YACVGLGGNF 360
  361 VGVVDGHITP KLAYRLKAGL SYQLSPEISA FAGGFYHRVV GDGVYDDLPE PMQ

Type	Start	End	Confidence
Signal Peptide	1	31	0.83
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	413	0.97