YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HAK2_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	22	0.79
Transmembrane Helix	23	44	0.56
Non-Cytoplasmic	45	60	0.55
Transmembrane Helix	61	79	0.67
Cytoplasmic	80	151	0.87
Transmembrane Helix	152	172	0.95
Non-Cytoplasmic	173	190	0.82
Transmembrane Helix	191	210	0.93
Cytoplasmic	211	219	0.76
Transmembrane Helix	220	242	0.92
Non-Cytoplasmic	243	267	0.90
Transmembrane Helix	268	289	0.89
Cytoplasmic	290	298	0.71
Transmembrane Helix	299	320	0.89
Non-Cytoplasmic	321	338	0.90
Transmembrane Helix	339	363	0.85
Cytoplasmic	364	390	0.82
Transmembrane Helix	391	411	0.89
Non-Cytoplasmic	412	419	0.69
Transmembrane Helix	420	442	0.91
Cytoplasmic	443	447	0.79
Transmembrane Helix	448	468	0.92
Non-Cytoplasmic	469	475	0.76
Transmembrane Helix	476	496	0.93
Cytoplasmic	497	783	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAEAGVGGA DQLPWRQHYR NLLLLAYQSF GVVYGDLSTS PLYVYKSTFS GRLRRYQDEQ  60
   61 TVFGVLSLIF WTFTLIPLLK YVTIVLSADD NGEGGPFALY SLLCRHAKLS FLPNQQSADE 120
  121 ELSTYYRNGF TSRHGSLPWL RRFMEKHKNA RTVLLLIVLC GASMMIGDGI LTPAISVLSS 180
  181 MSGLKVRATG LHDRSVVLLS CIVLVGLFAL QHRGTQKVAF MFAPIVVIWL FCIGGIGLYN 240
  241 IIHWNPRIYQ ALSPYYIVKF FRTTGKDGWI ALGGILLSMT GCEAMFADLG HFTSASVRLA 300
  301 FITIIYPCLI LQYMGQAAFL SKNILDMPTG FYDSIPGPIF WPVFVVATLA AVVGSQAVIS 360
  361 ATFSIVKQCH SLGCFPRVKV VHTSRWIYGQ IYIPEINWIL MVLCVAVTVA FRDITLIGNA 420
  421 YGVACMTVMF VTTFLMALIM IFVWQKNIIF ALSFFLLFGS VEVVYLSSSL MKVTQGGWVP 480
  481 LVLALIFMSV MYIWHYGTRK KYQYDLQNKV SMRYILSLGP SLDVVRVPGI GLIYTELVTG 540
  541 VPNIFTHFTT NLPAFHEVLV FLCVKSVPVP YVSPDERYLV GRIGPRAYRM YRCIVRYGYK 600
  601 DVQRDDDNFE NMLVMNIGKF IMMEAEDASS SASYDTANEG RMAVITTSDD YDSPLAVRDS 660
  661 NDLADSMTMR STKSESLRSL QSSYEQESPN VSRRRRVRFE LPEEDDMDQQ VKDELLALVE 720
  721 AKHTGVTYVM GHVYIKARKN SSFFKRFAID VGYSFLRKNC RGPSVTLHIP HISLIEVGMA 780
  781 YQV