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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: RHD3_ORYSJ
Protein type: Transmembrane
Type Confidence: 0.77
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDACFSTQLI DGDGVFNVSG LENFMKEVKM GECGLSYAVV SIMGPQSSGK STLLNHLFRT  60
   61 NFREMDAFKG RSQTTKGIWM AKAHNIEPCT LVMDLEGTDG RERGEDDTAF EKQSALFALA 120
  121 VSDIVLINMW CHDIGREQAA NKPLLKTVFQ VMMRLFSPRK TTLLFVIRDK SKTPLENLEP 180
  181 ILREDIQKIW DGVPKPHAHK ETPLSEFFNV EVVALSSYEE KEELFKEQVA SLRDRFQQSI 240
  241 APGGLAGDRR GVVPASGFSF SSQQFWKVIK ENKDLDLPAH KVMVATVRCE EIGNEKIASF 300
  301 TADEEWQQFE EAVQHDYVPG FGKKISNLLD RCLSEYDMEA IYFDEGVRTS KRHQLESKLL 360
  361 QLVNPAYQNI LDHLRTRTLE VFKESFDKSL EKEGFAVAAR DCTKVFLEKF DKGSEDAAIQ 420
  421 QVKWDPSKIK DKLKRDIEAH VASVRAKKLS ELCSKYEGQL TKALAEPVEA LLDSASEETW 480
  481 PAIRKLLQRE TKSAVSGFES AMASFELDEV TQKELLSKLE SHGKSVVESK AKEEAARVLI 540
  541 RMKDRFSTLF SRDADSMPRV WTGKEDIKAI TKTARSASMK LLSTMAAIRL DEDGDNIENT 600
  601 LSLALVDTAR PGTTDRSIQS FDPLASSSWE RVPEEKTLIT PVQCKSLWRQ FKAETEYTVT 660
  661 QAIAAQEANK RNNNWLPPPW ALAAMAILGF NEFMTLLKNP LYLGVIFVVF LVGKAMWVQL 720
  721 DIAKEFQNGF LPAVLSLSTK FVPTIMNILK RLADEGQRPA APERQREMEL QPKSTRNGSH 780
  781 SNVTSAGSSS ITSSESGPEY SSPIAH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle