YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55620860
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.54
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVPPPAPRS FLCRALCLFP RVFAAEAVTA DSEVLEERQK RLPYVPEPYY PESGWDRLRE  60
   61 LFGKDEQQRI SKDLADICKT AATAGIIGWV YGGIPAFIHA KQQYIEQSQA EIYHNRFDAV 120
  121 QSAHRAATRG FIRYGWRWGW RTAVFVTIFN TVNTSLNVYR NKDALSHFVI AGAVTGSLFR 180
  181 INIGLRGLVA GGIIGALLGT PVGGLLMAFQ KYSGETVQER KQKDRKALHE LKLEEWKGRL 240
  241 QVTEHLPEKI ESSLQENEPE NDAKKIEALL NLPRNPSVID KQDKD

Type	Start	End	Confidence
Signal Peptide	1	24	0.65
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	163	0.64
Transmembrane Helix	164	183	0.55
Cytoplasmic	184	186	0.33
Transmembrane Helix	187	209	0.78
Non-Cytoplasmic	210	285	0.48