YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113622742, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPRLLLALA LVLLASGASA ASVGDTCSSE GDCGAGLHCS DCGGGGGGDK TCTRAKPIDP  60
   61 LTHGTDLPFN NYSWLTTHNS YALAGSSSAT GSALITQTNQ EDTITAQLKN GVRGLMLDTY 120
  121 DFNNDVWLCH SFQGKCFNFT AFQPAINVLK EIRTFLDGNP SEVITIFLED YTASGSLPKV 180
  181 FNASGLMKYW FPVAKMPKSG GDWPLLKDMI SQNERLLVFT SKKSKEASEG IAYEWSYVVE 240
  241 NQYGNEGMVE GKCPNRAESP AMDSKSQSLV LMNFFTTDPS QTGVCANNSA PLVSMLKTCH 300
  301 DLSGNRWPNY IAVDFYMRSD GGGAPLATDI ANGHLVCGCD NIAYCKANST FGTCVIPPPS 360
  361 PPPSPRKAPS GGKGTSAGGS SSSSGAMARV VLPKLSFFFG VALLILVILS Y

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	389	0.99
Transmembrane Helix	390	409	0.83
Cytoplasmic	410	411	0.71