YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30851526
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVCRPRRCCS STAETAAAKA EDDSFLQWFL LLIPATAFGL GTWQVQRRKW KLKLIAELES  60
   61 RVMAEPIPLP ADPMELKNLE YRPVKVRGHF DHSKELYIMP RTMVDPVREA RDAGRLSSTE 120
  121 SGAHVVTPFH CSDLGVTILV NRGFVPRKKV NPETRQKGQV LGEVDLVGIV RLTENRKPFV 180
  181 PENSPERNHW YYRDLEAMAK ITGADPIFID ADFHSTAPGG PIGGQTRVTL RNEHMQYILT 240
  241 WYGLCAATSY LWFQKFVRRT PIM

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.72
Transmembrane Helix	25	45	0.68
Cytoplasmic	46	236	0.59
Transmembrane Helix	237	254	0.76
Non-Cytoplasmic	255	263	0.52