YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28855846, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKRNSLKSW FKSGAPGVWM SAGAVSIAVI MTIGLLAVIA VRGLGHFWPA DLVVAQYAVP  60
   61 DQPAHVLVGE LVEQEQVPRA RLKSAGLPVP DQGPEFMTRE LFKVGNRDLN PSDFTWVVGE 120
  121 WLSGQSSPAE LMTLERREWG NFYGYLVNVK EGGRVVAEGE AAWPTLQERI KRIETLADEL 180
  181 YSLEKKDIGA INHGIERLRL QARKLELAGK LDAAAQADMA AERAELDARY KVIEGRLETL 240
  241 HQAFDRDSLT ARDADGKTIE ISLGKVVHAY QPNAMGTFTK LGFYFQKLWE FLSDDPREAN 300
  301 TEGGIFPAIF GTVMMTLIMA VIVTPFGVLA AVYLREYARQ GLVTRLIRIA VNNLAGVPAI 360
  361 VYGVFGLGFF VYVLGGSVDR LFFPEALPAP TCGTPGLLWA SLTLALLAVP VVIVATEEGL 420
  421 ARIPLTLREG SLALGATKAE TLWKIVLPMA SPAMMTGLIL AVARAAGEVA PLMLVGVVKL 480
  481 APSLPVDGNY PYLHLNQKIM HLGFHIYDVG FQSPNVEAAR PLVYATALLL VLVIALLNLS 540
  541 AVSIRNHLRE KYKALDN

Type	Start	End	Confidence
Cytoplasmic	1	16	0.81
Transmembrane Helix	17	40	0.82
Non-Cytoplasmic	41	307	0.94
Transmembrane Helix	308	333	0.88
Cytoplasmic	334	350	0.90
Transmembrane Helix	351	374	0.90
Non-Cytoplasmic	375	395	0.90
Transmembrane Helix	396	416	0.90
Cytoplasmic	417	444	0.86
Transmembrane Helix	445	466	0.85
Non-Cytoplasmic	467	521	0.93
Transmembrane Helix	522	542	0.94
Cytoplasmic	543	557	0.91