YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|227081973, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.92
Transmembrane Helix	30	54	0.83
Cytoplasmic	55	66	0.94
Transmembrane Helix	67	88	0.89
Non-Cytoplasmic	89	108	0.85
Transmembrane Helix	109	131	0.92
Cytoplasmic	132	139	0.95
Transmembrane Helix	140	160	0.95
Non-Cytoplasmic	161	200	0.92
Transmembrane Helix	201	221	0.95
Cytoplasmic	222	231	0.81
Transmembrane Helix	232	251	0.94
Non-Cytoplasmic	252	400	0.99
Transmembrane Helix	401	422	0.93
Cytoplasmic	423	433	0.86
Transmembrane Helix	434	457	0.87
Non-Cytoplasmic	458	483	0.85
Transmembrane Helix	484	506	0.85
Cytoplasmic	507	541	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNVSFSRHK GVTMIDVVDL SRLQFALTAM YHFLFVPLTL GMAFLLAIME SLYVMTDKQI  60
   61 YKDMTKFWGK LFGINFALGV ATGLTMEFQF GTNWSYYSHY VGDIFGAPLA IEALVAFFLE 120
  121 STFVGLFFFG WDRLSKRQHL VVTWLVALGS NFSALWILVA NGWMQNPVGS EFNFETMRME 180
  181 MVSFADVVLN PVAQVKFVHT VAAGYTTGAM FILGISAYYL LKGRDVAFAR RSFAIAASFG 240
  241 MASVLSVIVL GDESGYELGE VQRVKLAAIE SEWHTEPAPA AFTLFGIPNQ EEMRTDYAIK 300
  301 IPFALGIIAT RSLDEQVVGL RDLRDEHVER IRTGIYAYDL LERLRAGEKT PENMAAFDEV 360
  361 KHDLGYGLLL KRYTDKVTDA TEEQIQAAAD DSIPTVWPLF WSFRIMVACG FIMLVVFGAA 420
  421 FIQTCRQKIE QKKWVLKAAL FSIPLPWIAV ETGWFVAEYG RQPWAVGEIL PVNVAASALS 480
  481 AGEIITSMLA ILALYTIFLI AEVYLMVKFT RKGPSSLKTG RYHFEQGAES VQDQVNRQVE 540
  541 A