YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229370019, gi...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMADKKATL HIEGKAPIEL PIMDGSLGPQ VIDVRTLGSN GYFTFDPGFL ATASCESQIT  60
   61 YIDGAKGILL HRGYPIDQLA NNADYLEVCY ILLYGEAPNR KQYEEFKKIV TRHTMVHEQI 120
  121 ASFFHGFRRD AHPMAVMCGV VGALAAFYHD SLDINNDTHR EIAAYRLLSK MPTLAAMCYK 180
  181 YSVGQPFIYP RNDLSYAENF LHMMFATPCE EYEVNPIVAR AMDKIFTLHA DHEQNASTST 240
  241 VRLAGSSGAN PFACIAAGIA SLWGPAHGGA NEACLRMLEE IGSVDKIPEY VRRAKDKDDP 300
  301 FRLMGFGHRV YKNYDPRATV MREACHEVLK ELSIQDPLLD VAMELERIAL SDEYFIEKKL 360
  361 YPNVDFYSGI ILKAIGIPVS MFTVIFAMSR TIGWIAHWNE MHSDPDNRIG RPRQLYTGQK 420
  421 LRDFTPLHER S

Type	Start	End	Confidence
Non-Cytoplasmic	1	369	0.61
Transmembrane Helix	370	393	0.67
Cytoplasmic	394	431	0.54