YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|153819925, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATMKDVAQL AGVSTATVSR ALMNPEKVSS STRKRVEEAV LEAGYSPNSL ARNLRRNESK  60
   61 TIVAIVPDIC DPYFSEIIRG IEDAAMEHGY LVLLGDSGQQ KRRENSFVNL VFTKQADGML 120
  121 LLGTDLPFDV SKPEQKNLPP MVMACEFAPE LELPTVHIDN LTSAFEAVNY LTQLGHKRIA 180
  181 QISGPQHAAL CQFRHQGYQQ ALRRAGITMN PTYCTFGDFT FEAGAKAVRQ LLALPEQPTA 240
  241 IFCHNDTMAI GAIQEAKRLG LRVPQDLSVV GFDDIQFAQY CDPPLTTISQ PRYEIGRQAM 300
  301 LMMLELLRGH DVRAGSRLLE TKLVVRESAA PPSKK

Type	Start	End	Confidence
Signal Peptide	1	21	0.56
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	335	0.99