YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|121729381, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPGEALTP SSYITHHLTN LSTYKLGLVA EESSFWNVHI DSLFFSVLTG LIFLGVFRAV  60
   61 ARKATAGVPG KLQCAVEMVV EFVDKNVKDT FHGRNPLIAP LALTIFCWVF LMNLMDLVPI 120
  121 DFLPYPAQHW LGIPYLKVVP SADVNITMAM ALGVFALMIY YSIKVKGLGG FAKELALHPF 180
  181 NHWIMIPFNL LIEVVSLLAK PLSLGMRLFG NMFAGEVVFI LCAAMLPWYL QWMGSLPWAI 240
  241 FHILVILIQS FVFMMLTIVY MSMAHEDNDH

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.82
Transmembrane Helix	38	61	0.81
Cytoplasmic	62	96	0.87
Transmembrane Helix	97	120	0.83
Non-Cytoplasmic	121	140	0.79
Transmembrane Helix	141	163	0.87
Cytoplasmic	164	179	0.79
Transmembrane Helix	180	202	0.67
Non-Cytoplasmic	203	207	0.54
Transmembrane Helix	208	230	0.88
Cytoplasmic	231	237	0.54
Transmembrane Helix	238	261	0.90
Non-Cytoplasmic	262	270	0.55