YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|227119230, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLLILTYT ALCVAVFKVF KIPLNKWTVP TAVLGGVILI GTLILLMNYN HPFTQLGSQV  60
   61 YSTTPIVSGV RGRVVEVPVK PNQPLTQGDV LFRIDPIPFE ADVARLKAKV KEASQGALGL 120
  121 ESTLKEAQAA VLKAIAERDK AQREYDRYQR GYQRGAFTEQ QMDTTRQTYK AAQAALEVAQ 180
  181 SKQEQAQIAL DSEVGGENTT VAQLLAELRK AEFDLEQTIV RAPTDGYVTQ LALRPGMMSV 240
  241 PLPLAPVMTF VHTEEKIYTA AFRQNSLQRL QPGFAAEFMF RALPGKVFKG EVIEVLPAIG 300
  301 ESQIQARGAL LGTDALRTSG RVFVTLRITD DLSQYHLPMG SAVEVAVYSD SFEHVSIMRK 360
  361 VLIRMKSWQN YLYLDH

Type	Start	End	Confidence
Cytoplasmic	1	26	0.65
Transmembrane Helix	27	49	0.87
Non-Cytoplasmic	50	376	0.95