YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATKA_CHRVO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.68
Transmembrane Helix	7	27	0.90
Cytoplasmic	28	62	0.74
Transmembrane Helix	63	84	0.92
Non-Cytoplasmic	85	136	0.84
Transmembrane Helix	137	159	0.90
Cytoplasmic	160	176	0.88
Transmembrane Helix	177	199	0.86
Non-Cytoplasmic	200	285	0.97
Transmembrane Helix	286	304	0.94
Cytoplasmic	305	312	0.75
Transmembrane Helix	313	334	0.67
Non-Cytoplasmic	335	366	0.70
Transmembrane Helix	367	387	0.66
Cytoplasmic	388	393	0.37
Transmembrane Helix	394	414	0.47
Non-Cytoplasmic	415	418	0.50
Transmembrane Helix	419	439	0.90
Cytoplasmic	440	457	0.87
Transmembrane Helix	458	480	0.91
Non-Cytoplasmic	481	525	0.77
Transmembrane Helix	526	549	0.84
Cytoplasmic	550	565	0.65
Transmembrane Helix	566	587	0.89
Non-Cytoplasmic	588	602	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPAMLQLG LFLVVLIALA WPLGAYMTRV MQGENIGPAR WCAPLERGFY RLAGIKQEEE  60
   61 MGWRGYAVAL ILFNVLGVAA VYALQRLQGM LPFNPQAMAA VSPDSSFNTA ISFVTNTNWQ 120
  121 GYGGETTMSY LTQMLGLTVQ NFVSAATGAA VVIALIRGFA RHSSAKIGNF WVDVTRMTLY 180
  181 VLLPLAVVFA LVFTQQGAIQ NLSAYQDVHT VETVKYQQPK QDAKGNPVLG KDGKPVMEDK 240
  241 TSQTQTLPMG PVASQEAIKM LGTNGGGFFN ANSAHPFENP TPLANFLQDI AIFLIPAALC 300
  301 FLFGRMVGDR RQGWAILAAM TIMFATAVVV ETRAEQAGVP QYSSLGIDQR ASQLQSGGNM 360
  361 EGKEARFGII DTSLFVAVTT SASCGAVNAM HDSLTPIGGL VPMFLMQLGE VVFGGVGSGL 420
  421 YGMLIFAILA VFIAGLMVGR TPEYLGKKIE TYEMKMTAIT ILVTPTLVLA LTAIAVSLAA 480
  481 GKAGIANPAA HGFSEILYAF TSAANNNGSA FAGLSANTPF YNIMTGLAMF FGRFFMIVPI 540
  541 LAIAGSLAAK KRLAVTGGTL PTHGPLFVTL LIGTVLLVGA LNYVPALALG PVVEHLQMLA 600
  601 AR