YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115447029, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.55
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPTAPSRTG RALALLPVLV LLLLVCSPAA SAGEQKGVCV SPGGRFPAFS SEGKRPGRAA  60
   61 KGRRDLALCR VFRQNTCCDV SQTFSALLSV RKLASTGEGS QECLHLWELL ECSICDPRVG 120
  121 VRPGPPVICA SFCDMVFKAC SEAYFAIDVK TQALSPCGLG DILCGKAHKW VSNGTELCRS 180
  181 AGFSVQALET TSGGVDDTFC YGGKASFDAI SSSWTSSKER PVLSDVASWN LEDFRRWARE 240
  241 MPASERVSWA IGGMVLTAGL IFISKRKSYI PGQKQAAIAR NVRKLESRVN PQQLRRN

Type	Start	End	Confidence
Signal Peptide	1	32	0.99
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	246	0.99
Transmembrane Helix	247	264	0.52
Cytoplasmic	265	297	0.53