YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSTR5_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.98
Transmembrane Helix	41	61	0.95
Non-Cytoplasmic	62	74	0.84
Transmembrane Helix	75	95	0.90
Cytoplasmic	96	115	0.87
Transmembrane Helix	116	136	0.78
Non-Cytoplasmic	137	147	0.71
Transmembrane Helix	148	167	0.78
Cytoplasmic	168	173	0.83
Transmembrane Helix	174	195	0.80
Non-Cytoplasmic	196	206	0.66
Transmembrane Helix	207	227	0.87
Cytoplasmic	228	244	0.74
Transmembrane Helix	245	265	0.93
Non-Cytoplasmic	266	279	0.76
Transmembrane Helix	280	299	0.81
Cytoplasmic	300	308	0.60
Transmembrane Helix	309	332	0.69
Non-Cytoplasmic	333	333	0.20
Transmembrane Helix	334	349	0.65
Cytoplasmic	350	405	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRNGVVECS VCRSRLVVPS PRSVSRAYDK HRSKISSKFR ALNVLLVVGD CILVGLQPIL  60
   61 VFMSKVDGKF QFSPISVNFL TEVTKVVFAI VMLIIQSRKQ KVGEKPLLAR STFIQAARNN 120
  121 ALLAVPALLY AINNYLKFIM QLYFNPSTVK MLSNLKVLVI AVLLKFIMKR RFSVIQWEAL 180
  181 ALLLIGISIN QLRTVPAGNT AFGLPVTAIA YIYTLIFVTV PSLASVYNEY ALKSQYDTSI 240
  241 YLQNLFLYGY GAIFNFLGIL GTALFQGPES FNILRGHSRA TMFLICNNAA QGILSSFFFK 300
  301 YADTILKKYS STVATIFTGL ASAAFLGHTL TINFLLGISV VFISMHQFFS PLAKAKDDKP 360
  361 AELLELEDTQ NHRSSESSFV NMTAGAAEDA SHRIGTDERQ PLLPT