YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125540962
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.82
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPSRSSPT AAAAGDALLA AAAAPGDAPD ATALAVAADA DAEFGFQRAE LGTEKLAGTV  60
   61 QFHERHVFLC YKGPEVWPSH VEAAESDRLP RLLAAAIKTH KSDLKKKTKL TICEGEDGTE 120
  121 SSNGDVLIFP DMIRYRGLTH FDVDNFVQEV LVKDTEWLPG SPEAIKGSYV FVCCHASRDK 180
  181 RCGVCGPALI KRFKEEIGVQ GLADQVSVSA CSHVGGHKYA GNVIVFSADA KGEVTGHWYG 240
  241 YVSPDDVPVL LHKHIGQGEI VDHLWRGQMG LSEEEQRKAL ESKHVTNGVT EDGAHESPEE 300
  301 TTNGSACNPV AAGGCCQGNG GFTCCQSDLP KEDKSITAEQ NQKSSEKGAD KECAAGSKKR 360
  361 HMKMCSMPTW FETWETADTY AALGIVAAAA SVFVAFRIYK NLN

Type	Start	End	Confidence
Signal Peptide	1	23	0.96
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	378	0.99
Transmembrane Helix	379	399	0.80
Cytoplasmic	400	403	0.79