YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41469223, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPNVITEAG ISTRLNQWWG SIPFITSGVI LICGAIYLVC LLTGYDSFAE ICFLPSVVAS  60
   61 RFQVYRFYTS VVFHGSLLHV LFNMLALVPL GTELERIMGS VRLLFLMFLL ATTNAIFHLI 120
  121 IAFLAAYNPL YPLHFLVDEC SIGFSGVIFS MIVIETSLSG VQTRSVFGLF NVPANWYAWI 180
  181 LLVLFQFLAS NVSLLGHLCG ILSGFAYTYG LFNYLLPGPS FYSSIEGLSV LSVCVRRPGF 240
  241 ILCTGGTTYG QLPTFSNTST APSALINANF LRNISSWIPS RQTTTTQGNT QEQDPRFPGR 300
  301 ARTLSSAGTE PTAREASANL HASLLDSTTP SDPLTSSQHP AANTVRADAT VAADQVDTFD 360
  361 EELKKLVGMG FEKTQAEVAL AAADGDPNVA IEILMSQQG

Type	Start	End	Confidence
Cytoplasmic	1	18	0.94
Transmembrane Helix	19	41	0.91
Non-Cytoplasmic	42	69	0.86
Transmembrane Helix	70	91	0.86
Cytoplasmic	92	102	0.85
Transmembrane Helix	103	126	0.91
Non-Cytoplasmic	127	134	0.82
Transmembrane Helix	135	154	0.83
Cytoplasmic	155	166	0.62
Transmembrane Helix	167	189	0.78
Non-Cytoplasmic	190	193	0.59
Transmembrane Helix	194	216	0.75
Cytoplasmic	217	399	0.59