YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125585472, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACCCLRAST APRFLLFRAA ARRAPLPVAV SRKGFSEQSV LPITDMIENF QGPSMENIPR  60
   61 IPLYDDSLPS SLLTTSPNPS DSVAHADPSK SRIMLVDGTS VMYRSYYKIL GKCFLILFVT 120
  121 SVLVYYVWLL LLIKLQHGQL EHADGNGDWV LTIFKALSLV LDMLEFIPSH AAVVFDHDGV 180
  181 PYGHYTAMPS KECHMAKGMT FRHMLYPSYK SNRIPTPDTI VQGMQYLKAS IKAMSIKVIE 240
  241 VPGVEADDVI GTLAVSSVSA GYKVRIVSPD KDFFQILSPS LRLLRIAPRG SGMVSFGVED 300
  301 FVKRYGALKP SQFVDVVALS GDKADNIPGV EGIGDINAVK LITKFGSLEN LLKSVDEVEE 360
  361 ERIKQALISQ SEQAMLCKSL ATLRSDLPSY MVPFKTSDLV FQKPKDDGAK FIKLLRALEA 420
  421 YAEGSSADLI IRRAAYLWNK LNS

Type	Start	End	Confidence
Cytoplasmic	1	108	0.97
Transmembrane Helix	109	130	0.89
Non-Cytoplasmic	131	443	0.96