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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|38345601, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWRMAVSRL LHGCVLVLLL AAAVVQAQRA ATRTDPTEAA ALNAVFAKLG QQAQSSWNLS  60
   61 GDPCTGRATD GSAIDDTSFN PAITCDCTFQ NSTICRITKL KIHAVDASGP IPEELRNLTR 120
  121 LTDLNLGQNL LSGPLPSFIG ELTNMQKMTF GINSLSGPIP KELGNLTNLI SLGLGSNHFN 180
  181 GSLPTELGNL IKLQELYIDS AGLSGPLPSS LSKLTRMQIL WASDNNFTGQ IPDYIGSWNL 240
  241 TDLRFQGNSF QGPIPAALSN LVQLSSLRIG DIENGSSSSL AFISNMTSLS ILILRNCRIS 300
  301 DNLASLDFSK FASLSLLDLS FNNITGEVPA TLLGLNSLNF LFLGNNSLSG SLPTSKGSSL 360
  361 STLDFSYNQL SGNFPPWASD KNLQLNLVAN NFVIDSSNNS ILPSGLACLQ RNTSFFLGSP 420
  421 QSSSFAVNCG SNRFISGSDN LRYETDDVNL QAASYNVTGA PTWGVSNVGK FMDAPNGNYI 480
  481 IYSSRQFQHT LDSELFLTSR MSPSSLRYYG IGLENGNYTV TLQFAEFGIE DTQSWKSLGR 540
  541 RVFDIYVQGE RKEKNFDIRK TAGDKSYTVV KKQYKVPVTK NFLEIHLFWA GKGTCCIPTQ 600
  601 GYYGPTISAL SVIPADFTPT VGNTAHKNKS TSKTGVIVGV VVGVTVLGLV ALVGIFMWRQ 660
  661 KRRKLSLEQQ ELYSIVGRPN VFSYSELRSA TENFSSSNRL GEGGYGTVYK GKLTDGRVVA 720
  721 VKQLSQTSHQ GKKQFATEIE TISRVQHRNL VKLYGCCLEG NNPLLVYEYM ENGSLDKALF 780
  781 GTEKLTIDWP ARFEICLGIA RGLAYLHEES SICVVHRDIK ASNVLIDANL NPKISDFGLA 840
  841 KLYDDKKTHV STKVAGTFGY LAPEYAMRGH MTEKVDVFAF GVVLLETLAG RPNYDDTLEE 900
  901 DKIYIFDMAW ELYENNNPLG LVDPKLKEFN REEVLRAIRV ALLCTQWSPH QRAPMSRVVS 960
  961 MLAGDVEVPD VLTKPSYITE LADHGWQHQL RQQRSHRAVE LGAGIGLGAA RLVIVLELRH1020
 1021 PGRPVIFARV 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle