YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30721657
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKILLFLLL SMSLFAAEAT IPTVNLSLSA PNTPNQLVTT LNIVIVLTIL ALAPSIVFVM  60
   61 TSFLRLIVVF SFLRQAMGTQ SMPPNTILVT LALILTFFIM EPVATKSYNE GIKPYLSEKI 120
  121 GYEEAFIKGA KPFKDFMLKN TREKDLALFY RIRNLPNPKT IDDVPLTVLV PAFMISELKT 180
  181 AFEIGFLIYL PFLVIDMVVS SVLMAMGMMM LPPTMISLPF KLLIFVLVDG WNLLVQRLVE 240
  241 SFVT

Type	Start	End	Confidence
Signal Peptide	1	19	0.95
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	42	0.90
Transmembrane Helix	43	67	0.87
Cytoplasmic	68	83	0.79
Transmembrane Helix	84	104	0.74
Non-Cytoplasmic	105	184	0.79
Transmembrane Helix	185	208	0.83
Cytoplasmic	209	216	0.51
Transmembrane Helix	217	235	0.69
Non-Cytoplasmic	236	244	0.51