YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115476064, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADTQLGCHT IGSHGIKVAK FHLYDWMILI FLAVVYGLFN IIEPFHRFVG SDMLTDLRYP  60
   61 LKGNTVPFWA VPLIAIVLPW AIFGGIYFKK KNVYDLHHGI LGILYSVLIT AVITDAIKNG 120
  121 VGRPRPDFFW RCFPDGKPNF NNVTGDVICH GERSVIKEGY KSFPSGHSSG AFAGLGFLAW 180
  181 YLAGKLKAFK REGHIAKLCL VFLPLLVASL VAVSRVDDYW HHWQDVFAGG IIGLTVASFC 240
  241 YLQFFPYPFD ADAIWPHAHF QLLAESRSNG NENSHNMGWT ETDAFHEGAG AVALRDTSLV 300
  301 LDSMESGRRF

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	42	0.89
Non-Cytoplasmic	43	65	0.90
Transmembrane Helix	66	88	0.90
Cytoplasmic	89	95	0.89
Transmembrane Helix	96	117	0.89
Non-Cytoplasmic	118	164	0.95
Transmembrane Helix	165	184	0.91
Cytoplasmic	185	193	0.89
Transmembrane Helix	194	214	0.93
Non-Cytoplasmic	215	225	0.78
Transmembrane Helix	226	245	0.94
Cytoplasmic	246	310	0.97