YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZHD2_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFDDHDEGD GDEEMPPMPL SSGYDAPMQP GLGGGGGGVP KPGGGVGGGG GGGGGGGGGG  60
   61 ARYRECLKNH AVGIGGHAVD GCGEFMASGE EGSIDALRCA ACGCHRNFHR KESESPTGVG 120
  121 PAEPSAVSPA AISAYGASPH HQFSPYYRTP AGYLHHQQHQ MAAAAAAAAA AAAGGYPQRP 180
  181 LALPSTSHSG RDEGDDMSGM VGPMVIGPMV GMSLGSAGPS GSGSGKKRFR TKFTQEQKDK 240
  241 MLAFAERLGW RIQKHDEAAV QQFCEEVCVK RHVLKVWMHN NKHTLGKKAP

Type	Start	End	Confidence
Cytoplasmic	1	157	0.65
Transmembrane Helix	158	176	0.61
Non-Cytoplasmic	177	203	0.80
Transmembrane Helix	204	223	0.64
Cytoplasmic	224	290	0.67