YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|147904118, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHEKSFLVT GDPYSSAPYP VGQDPAPPPT YAPGPYPNTA SYPNTASYPN TAPYPNTAPY  60
   61 PNTAPYPNTA PYPNTAPYPS DVPYPNAVPY PQNVPMGQPP YPPYNQGPYP SGPYQQPPYG 120
  121 QKGYSSQSSD FDSPIHSTTY NEDGPPSYCD NQDFPTSHWD DKNIRRAFIR KVFLVLTAQL 180
  181 LVTFAFVAVF TFVDEAKLYV RRNVWTYYLS YAIFFVSLIT LSCCGDFRRR HPWNLVALSI 240
  241 LTLSLSYMVG MIASFYDTDA VIMAIGITAG VCFTVVLFSM QTKYDFTSCM GVLLVSLIVL 300
  301 LIFSILCIFI RNKILQIVYA SLGALLFTCF LAVDTQMILG NKQLSLSPEE YIFAALNLYT 360
  361 DIINIFLYIL AIIGKAKE

Type	Start	End	Confidence
Cytoplasmic	1	171	0.98
Transmembrane Helix	172	193	0.93
Non-Cytoplasmic	194	203	0.94
Transmembrane Helix	204	225	0.90
Cytoplasmic	226	232	0.85
Transmembrane Helix	233	254	0.90
Non-Cytoplasmic	255	259	0.82
Transmembrane Helix	260	280	0.88
Cytoplasmic	281	288	0.76
Transmembrane Helix	289	310	0.93
Non-Cytoplasmic	311	316	0.75
Transmembrane Helix	317	338	0.88
Cytoplasmic	339	351	0.81
Transmembrane Helix	352	373	0.77
Non-Cytoplasmic	374	378	0.62