YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16264377, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	54	0.92
Transmembrane Helix	55	73	0.85
Non-Cytoplasmic	74	79	0.74
Transmembrane Helix	80	99	0.93
Cytoplasmic	100	116	0.90
Transmembrane Helix	117	137	0.94
Non-Cytoplasmic	138	150	0.85
Transmembrane Helix	151	172	0.92
Cytoplasmic	173	180	0.91
Transmembrane Helix	181	203	0.90
Non-Cytoplasmic	204	211	0.67
Transmembrane Helix	212	230	0.73
Cytoplasmic	231	266	0.49
Transmembrane Helix	267	284	0.89
Non-Cytoplasmic	285	289	0.54
Transmembrane Helix	290	308	0.60
Cytoplasmic	309	324	0.84
Transmembrane Helix	325	347	0.86
Non-Cytoplasmic	348	354	0.61
Transmembrane Helix	355	374	0.84
Cytoplasmic	375	390	0.82
Transmembrane Helix	391	410	0.92
Non-Cytoplasmic	411	416	0.73
Transmembrane Helix	417	436	0.96
Cytoplasmic	437	449	0.84
Transmembrane Helix	450	472	0.93
Non-Cytoplasmic	473	478	0.94
Transmembrane Helix	479	501	0.92
Cytoplasmic	502	517	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHVPNRIGQI AHAVGDDPRP CNLTLRDPDS RDRGSEMTSL GKKVVSSAAW AAVETWGRQV  60
   61 AMFAVFVILA RHLGPEEFGL ATLAMIAPTI LATVVTRGIP DALVQRAEIE PIHLDSAFWL 120
  121 LVATGATLSA LIWAFAGVVA EAFGEPLLED LVRWTGIIVV VQSLAAVPTA VLKRELNFRL 180
  181 FTLRTLTGTM VGGTVGLTMA IAGYGMWSLV LMQVAKAIVE TTVILLGSSW RPRMAYSYAR 240
  241 CRELFGFAGP VIVQTLWTFV NEEIPKVILG LFLGPVAVGV YAIARRPLDL LGEFLLGPLA 300
  301 AITMPAVARV QREPDKIDHF FNTSVRMAAI AGFPAFVGFA AIAPVAVPLV FGPQWASAVV 360
  361 AVQILMILGL QRTIDSLCAY TILALGHSKL VLKLNMTYTL FSLVLLTAAA QISLEAVIAA 420
  421 LVACNLLLLP VFLFYVQHTA HIDVSKPLAI FPRLAGAAAL MFAIVSAWLL AAPDDLPQAV 480
  481 TVAAGIAIGA PIYIAAAVLL VRADLLKARD MLLSLRE