YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15025140, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.61
Transmembrane Helix	6	27	0.90
Cytoplasmic	28	34	0.58
Transmembrane Helix	35	54	0.90
Non-Cytoplasmic	55	63	0.54
Transmembrane Helix	64	88	0.82
Cytoplasmic	89	122	0.62
Transmembrane Helix	123	142	0.67
Non-Cytoplasmic	143	162	0.40
Transmembrane Helix	163	179	0.54
Cytoplasmic	180	180	0.18
Transmembrane Helix	181	197	0.82
Non-Cytoplasmic	198	211	0.53
Transmembrane Helix	212	237	0.80
Cytoplasmic	238	287	0.76
Transmembrane Helix	288	309	0.88
Non-Cytoplasmic	310	346	0.76
Transmembrane Helix	347	370	0.82
Cytoplasmic	371	398	0.78
Transmembrane Helix	399	419	0.80
Non-Cytoplasmic	420	445	0.86
Transmembrane Helix	446	466	0.94
Cytoplasmic	467	610	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIAYFTSLF MVFLRVFAFF IALQVMFPKS LPNTVKVMLS LCISFFVMPY INLSQVSALN  60
   61 NGFLYTWQCI CEILTGLILG FFANLMFLGV KIGGQFLDFQ IGYSMMTAYD PSSESNASLI 120
  121 ERFLNMFSVV LFFSIGGHEV VIKELVSSFN SVKLGTFVIN DQSVMVAFNV FVQFFVIGFK 180
  181 IALPVVLVLL ITDIVMGLMS RTVPQLNVMI LGMPIKILLG LTCLMIILPL IAKVLITSFS 240
  241 SLPDIYKGFY KLVPIGLIFA DSDKTEEATP KRKSEARKKG QVARSKEVPL AATLVAITFI 300
  301 ISLGGQTFFN GLGVMMQTFF QSYIHSNLTE LDLRRIIIFV ILNAGKFIFM FGVPVMVVGI 360
  361 VANIAQTGWI TTTEPIKPDL KKLNPISGFK RIFSMTTIVN LLKDLVVVAV LSVVGYKFLM 420
  421 SNYGDIANLN NLMVQYIPQA YLSYVISIFR IVALIMIVIA GFDFVYNRYK YKKDMKMTKH 480
  481 EVKEEFKQAE GDPEIKGKRR QRMREIVTRT MLSKVPDATV VITNPTHISV AIKYERGVDK 540
  541 APTVVAKGAD RTALRIKEIA KENNVPIMEN KPLARLIFKK VEVDEQIPAE MYQTVAEILA 600
  601 LVYKLNKKQG