YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10172642, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAQTEQTIN SEATAAPPPN PRIQSWKNFY KKLAKNKAAM VGLSLIIFFI VVALIGPYFT  60
   61 THDPYEPNVM NKLAEPSAEH WFGTDHHGRD IFTRIIHGMS ITLYVGFFSV VLGAIVGVIL 120
  121 GVVSGYYGRL VDTVIMRIMD VLLAFPGILL ALAIISILGG SINNVIIAVG IFSIPVFARI 180
  181 VRGSTLAVRK LEYIDAVKAL GASDARIIFK HILPNVLSPI IVQGTLSIAT SILTASALSF 240
  241 LGLGAQPPIP EWGAMLSDGR NYMYDAPHVA LFPGLAIVVV VLAFNIFGDG LRDALDPKSK 300
  301 N

Type	Start	End	Confidence
Cytoplasmic	1	38	0.97
Transmembrane Helix	39	60	0.93
Non-Cytoplasmic	61	102	0.95
Transmembrane Helix	103	127	0.88
Cytoplasmic	128	137	0.78
Transmembrane Helix	138	158	0.91
Non-Cytoplasmic	159	164	0.67
Transmembrane Helix	165	181	0.97
Cytoplasmic	182	219	0.90
Transmembrane Helix	220	245	0.82
Non-Cytoplasmic	246	268	0.88
Transmembrane Helix	269	288	0.95
Cytoplasmic	289	301	0.91