YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25287942
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.86
Transmembrane Helix	12	33	0.85
Non-Cytoplasmic	34	62	0.67
Transmembrane Helix	63	83	0.80
Cytoplasmic	84	88	0.47
Transmembrane Helix	89	112	0.84
Non-Cytoplasmic	113	124	0.56
Transmembrane Helix	125	149	0.84
Cytoplasmic	150	168	0.55
Transmembrane Helix	169	189	0.95
Non-Cytoplasmic	190	273	0.60
Transmembrane Helix	274	295	0.84
Cytoplasmic	296	301	0.77
Transmembrane Helix	302	320	0.91
Non-Cytoplasmic	321	326	0.66
Transmembrane Helix	327	348	0.89
Cytoplasmic	349	355	0.56
Transmembrane Helix	356	373	0.76
Non-Cytoplasmic	374	377	0.76
Transmembrane Helix	378	397	0.94
Cytoplasmic	398	675	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKKSFGVLQ RVGKALMLPV ALLPAAGILL AFGDALQNPD MTERFPFLTA DWIVIIAELM  60
   61 QNAGDIVFAN LALLFAVGVA IGLSNGDGVA GLAALIGYLI INVTMSVIGH VTPEMVGDSP 120
  121 AYASVLGIPT LQTGVFGGII AGLLGAYMYK KYFNIELPSY LGFFAGKRFV PIATAFFSLF 180
  181 VGVLLHFIWP TVQDGLNAFS YYMTESNRTV AAFIFGVIER ALIPFGLHHI FYSPFWFEFG 240
  241 QYTNAAGEIV RGDQRIFFAQ IRDGAELTAG TFMAGKFPFM MFGLPAAALA IYHCARPENK 300
  301 KVVAGIMASA ALTSFLTGIT EPIEFSFLFV APLLFAVHTI FAGLSFMIMH ILDIKIGMTF 360
  361 SGGVIDFILY GVLPNRTAWW LVIPIGLVFS VIYYFGFRFA IKKFNLMTPG REEPTEEDGA 420
  421 GAEVDKNSLP FNVLEALGGK ENLTNLDACI TRLRVNVKDA KNVDKNRLKK LGASGVMEVG 480
  481 NSIQAIFGPR SDQIKTQIQD ILDGKTPVVT EETPDEAQAA PVAGDISFAM PIEGKLLDLS 540
  541 DVPDEVFSKK MMGDGFAIEP TEGIVYAPFD GKVSTIFPTK HAIGLTTDTG KEVLIHIGID 600
  601 TVNLKGEGFT AHVEQDDIVQ QGQKLMSFDL DVINEKAKSA ITPIIFTNLA EGEHITLHTS 660
  661 GEQKANTENI LSIKQ