YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25493153
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.21
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	51	0.92
Transmembrane Helix	52	72	0.90
Cytoplasmic	73	79	0.78
Transmembrane Helix	80	100	0.94
Non-Cytoplasmic	101	106	0.79
Transmembrane Helix	107	128	0.92
Cytoplasmic	129	135	0.87
Transmembrane Helix	136	158	0.89
Non-Cytoplasmic	159	177	0.75
Transmembrane Helix	178	199	0.77
Cytoplasmic	200	223	0.45
Transmembrane Helix	224	238	0.80
Non-Cytoplasmic	239	239	0.01
Transmembrane Helix	240	254	0.75
Cytoplasmic	255	264	0.51
Transmembrane Helix	265	285	0.87
Non-Cytoplasmic	286	293	0.52
Transmembrane Helix	294	313	0.89
Cytoplasmic	314	332	0.64
Transmembrane Helix	333	357	0.87
Non-Cytoplasmic	358	384	0.64
Transmembrane Helix	385	406	0.93
Cytoplasmic	407	413	0.61
Transmembrane Helix	414	433	0.95
Non-Cytoplasmic	434	439	0.52
Transmembrane Helix	440	461	0.92
Cytoplasmic	462	467	0.64
Transmembrane Helix	468	490	0.91
Non-Cytoplasmic	491	493	0.49
Transmembrane Helix	494	509	0.21
Cytoplasmic	510	510	0.33
Transmembrane Helix	511	533	0.80
Non-Cytoplasmic	534	557	0.52
Transmembrane Helix	558	584	0.85
Cytoplasmic	585	598	0.58
Transmembrane Helix	599	619	0.91
Non-Cytoplasmic	620	627	0.52
Transmembrane Helix	628	646	0.89
Cytoplasmic	647	649	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFAGGFLLL LLLSAIHVTQ GQANLTLSEI VNDVWTEGRV QDIVVTLRLP RVLMGILAGG  60
   61 ALAVAGAMLQ TLTKNPLASA GILGINAGAY LFVVAAMIFV PNVLGQFPLI VSFMGAAVSA 120
  121 LLVLALVGKA MEPVRVALTG MIVTMLFSSI TGSLQLIYEN ETNGLFLWGS GTLVQLDWTG 180
  181 VKFSVGFIFA GWIGALLLGK SMDLYALGDD VATSLGQSVA RTKWLGWLVA IFLAAATVSV 240
  241 VGPIGFIGLI APHLVRMMGV RNHIPLFLHS FLWGAVLLVG ADVLARWIEP GREIPVGAMT 300
  301 AIIGGPWLMY LAYRTGKKHS QRRNRLGGHV VATPYWLVAS IMVGISVAIL VVSLSFGGTN 360
  361 FFSLQDWLDK QIFSPFVWQL RVPRIITAFL VGMLLALCGV LLQGVLRNPL ADPTVLGITS 420
  421 GGGAGAMIFL VLFPTASIQF LPFAAIIGAS ISIAIILLVT WRSNWEPILL ALMGVAVSAV 480
  481 GSAIIQIMVV KAQLGVAPAL AWLAGSTYAK SWTDVQLVTL FAIIAIPIGY LLSRKMDLLA 540
  541 YGDDVATGLG LDVTQTRLIA ILLGVSAGAA SVSVVGTIGF IGLLAPHAVR RIVGVEHKAM 600
  601 IPLSLLVGGI MLVAADFVGR LLLAPKEIPA GLVVAVLGTP YILYLLRKT