YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15615091, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.96
Transmembrane Helix	8	29	0.94
Non-Cytoplasmic	30	44	0.88
Transmembrane Helix	45	67	0.89
Cytoplasmic	68	75	0.91
Transmembrane Helix	76	96	0.92
Non-Cytoplasmic	97	101	0.74
Transmembrane Helix	102	125	0.86
Cytoplasmic	126	134	0.81
Transmembrane Helix	135	155	0.93
Non-Cytoplasmic	156	163	0.66
Transmembrane Helix	164	186	0.90
Cytoplasmic	187	226	0.99
Transmembrane Helix	227	248	0.94
Non-Cytoplasmic	249	257	0.73
Transmembrane Helix	258	277	0.93
Cytoplasmic	278	292	0.76
Transmembrane Helix	293	313	0.90
Non-Cytoplasmic	314	318	0.68
Transmembrane Helix	319	340	0.91
Cytoplasmic	341	349	0.82
Transmembrane Helix	350	373	0.88
Non-Cytoplasmic	374	380	0.90
Transmembrane Helix	381	403	0.91
Cytoplasmic	404	419	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTTKNRWLI ALAAVGIHIS IGSVYAWSVF TNPLIEQFGW GLGEVSLTFS IAIAFLGVSA  60
   61 AFMGHFVEKH GPRKSGMVAA SFFGLGTLGA GLAVSLESLW LLYFSYGVLG GFGLGVGYIT 120
  121 PVSTLVKWFP DRRGLATGLA IMGFGFASLV FSPIMNAFIT SVGIAATFFI LGGLYMIIMF 180
  181 TAALYLEPPP QGWVPAGFKE AKTENGRLQK QDLSQLTANE AVKTKRFWFL WTMLFINVTC 240
  241 GIAILAVASP MAQEITGMTA ATAATMVGLM GLFNGLGRIG WASISDYIGR PNVYTAFFLI 300
  301 QIVAFVMLPS ITHVLLFQVV LFFIMTCYGG GFASIPAYIG DLFGTKQLGA IHGYILTAWA 360
  361 LAGLVGPMIA SYIRETTNSY AGTLYIFTGM FIVALAVSLF IRVDIRQLRA QSNKQGLVS