YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15615234, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.73
Transmembrane Helix	10	34	0.89
Non-Cytoplasmic	35	45	0.66
Transmembrane Helix	46	66	0.80
Cytoplasmic	67	84	0.58
Transmembrane Helix	85	107	0.83
Non-Cytoplasmic	108	111	0.55
Transmembrane Helix	112	127	0.87
Cytoplasmic	128	137	0.66
Transmembrane Helix	138	159	0.91
Non-Cytoplasmic	160	168	0.74
Transmembrane Helix	169	192	0.91
Cytoplasmic	193	213	0.94
Transmembrane Helix	214	235	0.86
Non-Cytoplasmic	236	240	0.70
Transmembrane Helix	241	260	0.84
Cytoplasmic	261	271	0.68
Transmembrane Helix	272	293	0.88
Non-Cytoplasmic	294	313	0.72
Transmembrane Helix	314	331	0.91
Cytoplasmic	332	332	0.38
Transmembrane Helix	333	353	0.67
Non-Cytoplasmic	354	355	0.32
Transmembrane Helix	356	388	0.69
Cytoplasmic	389	396	0.53
Transmembrane Helix	397	419	0.90
Non-Cytoplasmic	420	426	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAAVLFGSF ALLLLLSVPI GIALGLATLL AILYSGTIPL EFLAQGLITS VDSFPLMAVP  60
   61 FFILAGEIMA RGGVTDRLFN VANALVGNRT GGFAIATVIT CMFFAAISGS GPATVAAIGG 120
  121 IMIPAMVKHG YDKRFATALV AAAGSLGVII PPSIPMVIYG VSASASIGGL FVGGIIPGLM 180
  181 IAGALMAYAY YYSRKKGYKG STEKTSFKHI LQSVWEAKWA LVIPFIILGG IYGGVFTPTE 240
  241 AAVVAVVYSL LAGFILYREL TIKQLPRVFA DAALTTATIL IIVGSATAFG RLLTIEQIPN 300
  301 QVADWMLTIS ENKIILILLI TILLLVVGCF MDTLAAIIIL TPILLPIAVT LGYDPIHFGM 360
  361 IMVVNLAIGF ITPPLGVNLF VGSGISGISI ESLSKAIVPF FLVMVLTLFI LVFVPQLTLY 420
  421 LVELRG