YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116077747, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQSISNLKL AERGAIISIS TYLILSAAKL AAGHLLHSSS LVADGFNNVS DIIGNVALLI  60
   61 GIRMARQPAD RDHRFGHWKI EDLASLITSI IMFYVGFDVL RDTIQKILSR EESVIDPLGA 120
  121 TLGIISAAIM FVVYLYNTRL SKKSNSKALK AAAKDNLSDA VTSLGTAIAI LASSFNYPIV 180
  181 DKLVAIIITF FILKTAYDIF IESSFSLSDG FDDRLLEDYQ KAIMEIPKIS KVKSQRGRTY 240
  241 GSNIYLDITL EMNPDLSVFE SHEIADQVES MLENRFGVFD TDVHIEPAPI PEDEILDNVY 300
  301 KKLLMREQLI DQGNQLEELL TDDFVYIRQD GEQMDKEAYK TKKELNSAIK DIQITSISQK 360
  361 TKLICYELDG IIHTSIWRRH ETWQNIFHQE TKKE

Type	Start	End	Confidence
Cytoplasmic	1	13	0.92
Transmembrane Helix	14	36	0.85
Non-Cytoplasmic	37	44	0.75
Transmembrane Helix	45	65	0.79
Cytoplasmic	66	77	0.83
Transmembrane Helix	78	97	0.83
Non-Cytoplasmic	98	117	0.77
Transmembrane Helix	118	137	0.95
Cytoplasmic	138	178	0.62
Transmembrane Helix	179	197	0.53
Non-Cytoplasmic	198	394	0.53