YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38234451
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLHLVLDCI SAFARFFMAY IWLAAGISKL NNRMETAQSI RAYEIFTDTW SNGLASVIGP  60
   61 LEIAGGVLLL FGIFLRKASW ISVTVLVLFI AGIAQAWARN LGIDCGCFGP QGLGENTARD 120
  121 YALIILRDIF FIALSLWTVY RPYKKFALYA

Type	Start	End	Confidence
Cytoplasmic	1	8	0.74
Transmembrane Helix	9	28	0.85
Non-Cytoplasmic	29	52	0.85
Transmembrane Helix	53	74	0.89
Cytoplasmic	75	79	0.78
Transmembrane Helix	80	99	0.92
Non-Cytoplasmic	100	120	0.86
Transmembrane Helix	121	140	0.90
Cytoplasmic	141	150	0.87