YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ASIC1_OPSTA
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLKADSEDV DYKQPAPIED FASRSTLHGI SHMFTYERVC IKRTLWILFF LGSVGALALV  60
   61 CVDRVQFYFQ YPHVTKLDEV AAPLMTFPAV TFCNLNSFRF SRVTRNDLYH AGELXALLNG 120
  121 RYEIRDTHLV EENVLEILKE RANFDNYKPR PFNMREFYDR TGHDIKDMLL SCYYRGVECN 180
  181 AENFKVIFTR YGKCYTFNSG KDGRPLLLTM KGGMGNGLEL MLDIQQDEYL PVWGETDETS 240
  241 FEAGIKVQIH TQSEPPFIDQ LGFGVAPGFQ TFVSCQEQRL TYLPPPWGDC KAAPMDSDFF 300
  301 STYSITACRI DCETRYLVEN CNCRMVHMPG DAPYCTPEQY KECADPALDF LVERDNDYCV 360
  361 CKTPCNLTRF GKEMSFVKIP SKASAKYLAK KFXKTEQYIA DNILVLDIYF DALNYETIEQ 420
  421 KKAYEVAGLL GDIGGQMGLF IGASILTILE LFDYLYEVLK YKLCRCVKKK HKGRGNKDRG 480
  481 AVLSLDDVKR HAPCENLRTP STYPGNMLPH HPGQGNFEDF TC

Type	Start	End	Confidence
Cytoplasmic	1	43	0.91
Transmembrane Helix	44	62	0.90
Non-Cytoplasmic	63	522	0.81