YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|213855169
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQELISQVED LAGIEMNHTT SLVVIFGIIF LTAVVVHIIL HWIVLRAFEK RASASSRLWL  60
   61 QIITQNKLFH RLAFTLQGII VNIQAALWLQ KGSEAADILT TCAQLWIMTY ALLSLFSLLD 120
  121 VIFNLSQKWP AASQLPLKGI FQGIKLIGAI IVGILMISLL IGQSPAILIS GLGAMAAVLM 180
  181 LVFKDPILGL VAGIQLSAND MLKLGDWLEM PKYGADGAVI DIGLTTVKVR NWDNTITTIP 240
  241 TWSLVSDSFK NWSGMSASGG RRIKRSINID ATSIHFLDDD EKQRLLTAQL LKPYLTSRHQ 300
  301 EIDEWNKQLD APESALNHRR MTNIGTFRAY LNEYLRHHPR IRKDMTLMVR QLAPDDHGLP 360
  361 IEIYAFTNTV VWLEYESIQA DIFDHIFAVV EEFGLRIHQT PTGSDIRALS GTLRH

Type	Start	End	Confidence
Non-Cytoplasmic	1	21	0.93
Transmembrane Helix	22	45	0.92
Cytoplasmic	46	67	0.91
Transmembrane Helix	68	88	0.92
Non-Cytoplasmic	89	102	0.84
Transmembrane Helix	103	125	0.86
Cytoplasmic	126	140	0.88
Transmembrane Helix	141	161	0.90
Non-Cytoplasmic	162	165	0.63
Transmembrane Helix	166	188	0.75
Cytoplasmic	189	415	0.89