YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|168240961, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSGRFIGVM SGTSLDGVDV VLAAIDETMV AQQASLTWPI PVHLKKGILD ICQGQPLTLS  60
   61 QLGQLDTQLG RLFAQAVNAL LAQQRLQPRD IVAIGCHGQT VWHEPTGEAP HTLQIGDNNH 120
  121 IVAHTGITVV GDFRRRDIAL GGQGAPLVPA FHHALLGHPT EKRMVLNIGG IANLSLLFPG 180
  181 QAVRGYDTGP GNMLMDAWIW RQCAQPYDKD AAWAKEGQVI LPLLQKMLRD PYFAASAPKS 240
  241 TGREYFNYGW LERHLTAFPG ADARDVQATL AELTAVSIAQ QVLLNGGCER LMVCGGGSRN 300
  301 PLVMARLAAL LPGIEVSTTD KAGISGDDME ALAFAWLAWR TLAGLPGNLP SVTGATEASV 360
  361 LGAIYPANPI TQS

Type	Start	End	Confidence
Signal Peptide	1	23	0.57
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	373	0.98