YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|213646837
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.86
Transmembrane Helix	7	25	0.94
Non-Cytoplasmic	26	53	0.86
Transmembrane Helix	54	76	0.90
Cytoplasmic	77	86	0.71
Transmembrane Helix	87	109	0.82
Non-Cytoplasmic	110	120	0.79
Transmembrane Helix	121	145	0.87
Cytoplasmic	146	152	0.91
Transmembrane Helix	153	177	0.90
Non-Cytoplasmic	178	191	0.85
Transmembrane Helix	192	213	0.93
Cytoplasmic	214	225	0.83
Transmembrane Helix	226	249	0.88
Non-Cytoplasmic	250	272	0.89
Transmembrane Helix	273	294	0.88
Cytoplasmic	295	341	0.63
Transmembrane Helix	342	361	0.83
Non-Cytoplasmic	362	368	0.58
Transmembrane Helix	369	392	0.86
Cytoplasmic	393	408	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGINEIIMYI MMFFMLIAAV DRILSQFGGS ARFLGKFGKS IEESGGQFEE GFMAMGALGL  60
   61 AMVGMTALAP VLAHVLGPVI IPVYEMLGAN PSMFAGTLLA CDMGGFFLAK ELAGGDVAAW 120
  121 LYSGLILGSM MGPTIVFSIP VALGIIEPSD RRYLALGVLA GIVTIPIGCI AGGLIAMYSG 180
  181 VQINGQPVEF TFALILMNMI PVLIVAVLVA LGLKFIPEKM INGFQIFAKF LVALITIGLA 240
  241 AAVVKFLLGW ELIPGLDPIF MAPGDKPGEV MRAIEVIGSI SCVLLGAYPM VLLLTRWFEK 300
  301 PLMNVGKLLN VNNIAAAGMV ATLANNIPMF GMMKQMDTRG KVINCAFAVS AAFALVDHLG 360
  361 FAAANMNAMI FPMIVGKLIG GVTAIGVAMM LVPKDDAAQV KTEAEAQS