YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56129533, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKHTQLLSA LALSVGLTLS APFPALASIP GQVPGQATLP SLAPMLEKVL PAVVSVKVEG  60
   61 TATQSQKVPE EFKKFFGEDL PDQPSQPFEG LGSGVIIDAA KGYVLTNNHV INQAQKISIQ 120
  121 LNDGREFDAK LIGGDDQSDI ALLQIQNPSK LTQIAIADSD KLRVGDFAVA VGNPFGLGQT 180
  181 ATSGIISALG RSGLNLEGLE NFIQTDASIN RGNSGGALLN LNGELIGINT AILAPGGGSI 240
  241 GIGFAIPSNM AQTLAQQLIQ FGEIKRGLLG IKGTEMTADI AKAFKLNVQR GAFVSEVLPN 300
  301 SGSAKAGVKS GDVIISLNGK PLNSFAELRS RIATTEPGTK VKLGLLRDGK PLEVEVTLDS 360
  361 NTSSSASAEM IAPALQGATL SDGQLKDGTK GVKVDSVEKS SPAAQAGLQK DDVIIGVNRD 420
  421 RISSIAEMRK VMAAKPSIIA LQVVRGNENI YLLLR

Type	Start	End	Confidence
Signal Peptide	1	27	0.99
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	455	0.97