YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22218117
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQDNTKSDE IDVLALLHKL WTKKLLILFT AFYFAVFSFL GTYFFIQPTY TSTTRIYVVN  60
   61 QATDNKNLSA QDLQAGTYLA NDYKEIITSN DVLSEVIKDE KLNLSEAELS KMVSVNIPTD 120
  121 TRLISISVNA KTGQDAQTLA NKVREVASKK IKKVTKVENV TTLEEAKLPE SPSSPNIKLN 180
  181 VLLGAVLGGF LAVVGVLVRE ILDDRVRRPE DVEDALGMTL LGIVPDTDKI

Type	Start	End	Confidence
Cytoplasmic	1	24	0.96
Transmembrane Helix	25	46	0.94
Non-Cytoplasmic	47	178	0.98
Transmembrane Helix	179	198	0.85
Cytoplasmic	199	230	0.85