YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68372573, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQSDQVNGS EDTVLHDGNQ ETSLGNDSVN TYKPAFVDDI TKHLSVQISL ILAYSLIILL  60
   61 GLVGNTLVIY MIILYRNMRT VTNYFIANLA LADLMVDTVC LPFTLVYTLL DEWKFGAVMC 120
  121 HMVPYSQALS VHVSILTLTI IALERYRCIV FHLGQRLNRC TSFIIIGLTW AFAAILAGPL 180
  181 AIFREYRYEE IPYIDLRIAV CSEKWPNGTN RDAVIYSLSM LLLQYVVPLA IISYAYVCIW 240
  241 IKLKNHVSPS NRNDGIVRRK KTTKMLALVV VVFAVCWLPF HMFQLASDLD LILKFKEYKL 300
  301 IYTLFHIVAM CSTFVNPLLY GWMNQNYRNG FLMFFRCEHK PDSIYPDGSF RTRSLRGMIV 360
  361 NGYNDGQPAA AV

Type	Start	End	Confidence
Non-Cytoplasmic	1	49	0.88
Transmembrane Helix	50	74	0.90
Cytoplasmic	75	83	0.80
Transmembrane Helix	84	106	0.82
Non-Cytoplasmic	107	122	0.84
Transmembrane Helix	123	143	0.85
Cytoplasmic	144	159	0.84
Transmembrane Helix	160	183	0.89
Non-Cytoplasmic	184	220	0.95
Transmembrane Helix	221	241	0.92
Cytoplasmic	242	261	0.93
Transmembrane Helix	262	283	0.90
Non-Cytoplasmic	284	301	0.90
Transmembrane Helix	302	323	0.92
Cytoplasmic	324	372	0.98