YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55742360, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSCTSNTPT VITGYQNGHK DVDPNSVEDE PLLRENPKRF VIFPIQYPDI WKMYKQAQAS  60
   61 FWTVEEVDLS KDLTHWDGLK SEEKHFISHV LAFFAASDGI VNENLVQRFS QEVQLPEARS 120
  121 FYGFQILIEN VHSEMYSMLI NTYIRDLKER DYLFNAVQTM PCVRRKADWA LQWISDTNST 180
  181 FGERLVAFAA VEGIFFSGSF AAIYWLKKRG LMPGLTYSNE LISRDEGLHC NFACLIYSYL 240
  241 VKKPSVDRVN DIIAKAVSIE QEFLTEALPV NLIGMNCSLM KQYIEFVADR LLTDLGLPKA 300
  301 YCSENPFDFM ESISLEGKTN FFEKRVAEYQ RLGVMSNVKD CEFTLDADF

Type	Start	End	Confidence
Non-Cytoplasmic	1	184	0.88
Transmembrane Helix	185	206	0.69
Cytoplasmic	207	349	0.64