YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25497745, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRYKTGHKQ PRFRYSVLAR CVAWANISVQ VLFPLAVTFT PVMAARAQHA VQPRLSMGNT  60
   61 TVTADNNVEK NVASFAANAG TFLSSQPDSD ATRNFITGMA TAKANQEIQE WLGKYGTARV 120
  121 KLNVDKDFSL KDSSLEMLYP IYDTPTNMLF TQGAIHRTDD RTQSNIGFGW RHFSGNDWMA 180
  181 GVNTFIDHDL SRSHTRIGVG AEYWRDYLKL SANGYIRASG WKKSPDIEDY QERPANGWDI 240
  241 RAEGYLPAWP QLGASLMYEQ YYGDEVGLFG KDKRQKDPHA ISAEVTYTPV PLLTLSAGHK 300
  301 QGKSGENDTR FGLEVNYRIG EPLAKQLDTD SIRERRVLAG SRYDLVERNN NIVLEYRKSE 360
  361 VIRIALPERI EGKGGQTLSL GLVVSKATHG LKNVQWEAPS LLAEGGKITG QGSQWQVTLP 420
  421 AYRPGKDNYY AISAVAYDNK GNTSKRVQTE VVITGAGMSA DRTALTLDGQ SRIQMLANGN 480
  481 EQKPLVLSLR DAEGQPVTGM KDQIKTELTF KPAGNIVTRS LKATKSQAKP TLGEFTETEA 540
  541 GVYQSVFTTG TQSGEATITV SVDGMSKTVT AELRATMMDV ANSTLSANEP SGDVVADGQQ 600
  601 AYTLTLTAVD SEGNPVTGEA SRLRFVPQDT NGVTVGAISE IKPGVYSAAV SSTRAGNVVV 660
  661 RAFSEQYQLG TLQQTLKFVA GPLDAAHSSI TLNPDKPVVG GTVTAIWTVK DAYDNPVTSL 720
  721 TPEAPSLAGA AAEGSTASGW TNNGDGTWTA QITLGSTAGE LEVMPKLNGQ NAAANAAKVT 780
  781 VVADALSSNQ SKVSVAEDHV KAGESTTVTL VAKDAHGNAI SGLALSASLT GTASEGATVS 840
  841 SWTEKGNGSY VATLTTGGKT GELRVMPLFN GQPAATEAAQ LTVIAGEMSS ANSTLVADNK 900
  901 APTVKTTTEL TFTVKDAYGN PVTGLKPDAP VFSGAASTGS ERPSAGNWTE KGNGVYVSTL 960
  961 TLGSAAGQLS VMPRVNGQNA VAQPLVLNVA GDASKAEIRD MTVKVNNQLA NGQSANQITL1020
 1021 TVVDTYGNPL QGQEVTLTLP QGVTSKTGNT VTTNAAGKAD IELMSTVAGE HNISASVNGA1080
 1081 QKTVTVKFNA DASTGQANLQ VDAAAQKVAN GKDAFTLTAN VEDKNGNPVP GSLVTFNLPR1140
 1141 GVKPLTGDNV WVKANDEGKA ELQVVSVTAG TYEITASAGN SQPSNTQTIT FVADKATATV1200
 1201 SGIEVIGNYA LADGNAKQTY KVTVTDANNN LLKDSEVTLT ASPANLVLTP NGTAKTNEQG1260
 1261 QAIFTATTTV AAKYTLTAKV SQADGQESTK TAESKFVADD TNAVLTASSD VTSLVADGIS1320
 1321 TAKLEVTLMS ANNPVGGNMW VDIKTPEGVT EKDYQFLPSK NDHFVSGKIT RTFSTSKPGV1380
 1381 YTFTFNALTY GGYEMKPVTV TITAVDADTA KGEEAMN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle