YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1786953, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.88
Transmembrane Helix	21	42	0.90
Cytoplasmic	43	54	0.91
Transmembrane Helix	55	76	0.89
Non-Cytoplasmic	77	96	0.84
Transmembrane Helix	97	119	0.92
Cytoplasmic	120	127	0.93
Transmembrane Helix	128	148	0.94
Non-Cytoplasmic	149	185	0.94
Transmembrane Helix	186	209	0.88
Cytoplasmic	210	219	0.82
Transmembrane Helix	220	239	0.94
Non-Cytoplasmic	240	388	0.99
Transmembrane Helix	389	413	0.90
Cytoplasmic	414	421	0.97
Transmembrane Helix	422	445	0.87
Non-Cytoplasmic	446	471	0.92
Transmembrane Helix	472	494	0.89
Cytoplasmic	495	523	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLDIVELSR LQFALTAMYH FLFVPLTLGM AFLLAIMETV YVLSGKQIYK DMTKFWGKLF  60
   61 GINFALGVAT GLTMEFQFGT NWSYYSHYVG DIFGAPLAIE GLMAFFLEST FVGLFFFGWD 120
  121 RLGKVQHMCV TWLVALGSNL SALWILVANG WMQNPIASDF NFETMRMEMV SFSELVLNPV 180
  181 AQVKFVHTVA SGYVTGAMFI LGISAWYMLK GRDFAFAKRS FAIAASFGMA AVLSVIVLGD 240
  241 ESGYEMGDVQ KTKLAAIEAE WETQPAPAAF TLFGIPDQEE ETNKFAIQIP YALGIIATRS 300
  301 VDTPVIGLKE LMVQHEERIR NGMKAYSLLE QLRSGSTDQA VRDQFNSMKK DLGYGLLLKR 360
  361 YTPNVADATE AQIQQATKDS IPRVAPLYFA FRIMVACGFL LLAIIALSFW SVIRNRIGEK 420
  421 KWLLRAALYG IPLPWIAVEA GWFVAEYGRQ PWAIGEVLPT AVANSSLTAG DLIFSMVLIC 480
  481 GLYTLFLVAE LFLMFKFARL GPSSLKTGRY HFEQSSTTTQ PAR