YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12517436, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSVDVAIVG GGMVGLAVAC GLQGSGLRVA VLEQRVPEPL AADAPPQLRV SAINAASEKL  60
   61 LTRLGVWQDI LSRRASCYHG MEVWDKDSFG HISFDDQSMG YSHLGHIVEN SVIHYALWNK 120
  121 AQQSSDITLL APAELQQVAW GENETFLTLK DGSMLTARLV IGADGANSWL RNKADIPLTF 180
  181 WDYQHHALVA TIRTEEPHDA VARQVFHGEG ILAFLPLSDP HLCSIVWSLS PEEAQRMQQA 240
  241 SEDEFNRALN IAFDNRLGLC KVESARQVFP LTGRYARQFA AHRLALVGDA AHTIHPLAGQ 300
  301 GVNLGFMDAA ELIAELKRLH RQGKDIGQYI YLRRYERSRK HSAALMLAGM QGFRDLFSGT 360
  361 NPVKKLLRDI GLKLADTLPG VKPQLIRQAM GLNDLPEWLR

Type	Start	End	Confidence
Signal Peptide	1	19	0.42
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	400	0.92