YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12518324, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLIILTYV AFAWAMFKIF KIPVNKWTIP TAALGGIFIV SGLILLMNYN HPYTFKAQKA  60
   61 VISIPVVPQV TGVVIEVTDK KNTLIKKGEV LFRLDPTRYQ ARVDRLMADI VTAEHKQRAL 120
  121 GAELDEMAAN TQKAKATRDK FAKEYQRYAR GSQAKVNPFS ERDIDVARQN YLAQEASVKS 180
  181 SAAEQKQIQS QLDSLVLGEH SQIASLKAQL AEAKYNLEQT IVRAPSDGYV TQVLIRPGTY 240
  241 AASLPLRPVM VFIPDQKRQI VAQFRQNSLL RLAPGDDAEV VFNALPGKVF SGKLAAISPA 300
  301 VPGGAYQSTG TLQTLNTAPG SDGVIATIEL NEHTDLSALP DGIYAQVAVY SDHFSHVSVM 360
  361 RKVLLRMTSW VHYLYLDH

Type	Start	End	Confidence
Cytoplasmic	1	26	0.49
Transmembrane Helix	27	49	0.85
Non-Cytoplasmic	50	378	0.70