YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|167419698, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCAVIEPVNG GQSGSILLCQ QCDMSVALPP LPYGTKAVCP RCKTTLTARW EEPRKRPIGY  60
   61 ALSALFMLLL ANLFPFVDMR VAGITSEISL IQIPQVMLSD NYVSIATLFM VLVQLIPAFC 120
  121 MVAIILLCLR VRMPIRWKTA MAKALFQFKT WCMVEIFLAG VLVSFVKLMA YGEIGIGSSF 180
  181 IPYCLFCLLQ VRAFQCIDRH WMWQDIAPAP AVPYRLIPGR TGLRQGLRSC SCCTAILPQD 240
  241 QVECPRCYTH GYVRRRNSLQ WTMALLVTSI LLYIPANMMP IMITESLGNQ MNSTIMAGVI 300
  301 FLWSEGSYPV ALVIFIASIM VPSLKMLAIA WLCWDAKGKG NTDTERMHFI YEIVEFVGRW 360
  361 SMVDVFVIAV LSSLVRIGQL MSIYPAIGAL LFAMVVILTM FSALTFDPRL TWDRINETTQ 420
  421 KEPQGDGQ

Type	Start	End	Confidence
Cytoplasmic	1	57	0.99
Transmembrane Helix	58	77	0.94
Non-Cytoplasmic	78	104	0.93
Transmembrane Helix	105	129	0.91
Cytoplasmic	130	147	0.89
Transmembrane Helix	148	168	0.90
Non-Cytoplasmic	169	173	0.72
Transmembrane Helix	174	194	0.90
Cytoplasmic	195	260	0.97
Transmembrane Helix	261	283	0.87
Non-Cytoplasmic	284	307	0.82
Transmembrane Helix	308	329	0.81
Cytoplasmic	330	355	0.89
Transmembrane Helix	356	377	0.88
Non-Cytoplasmic	378	382	0.78
Transmembrane Helix	383	406	0.89
Cytoplasmic	407	428	0.94