YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25513829
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELISLYGLF LAKVVTIVVA IGAVVLLVVS QGMRRQGQRG ELNLVDLGEQ YKETQREMRL  60
   61 ARMSHAEQKA WVKEFKKQEK ADQKLKKQRA KSGAVAAVKP CLYVIDFKGS IGAQEVSSLR 120
  121 EEISAILAVA TAQDEVLLRL ESPGGVVHGY GLAASQLARL RQRGIRLTVA VDKVAASGGY 180
  181 MMACVADRII CAPFAIIGSI GVVAQIPNFH RLLKKNDIDV ELHTAGEFKR TLTLFGENTE 240
  241 QGREKFREDL NETHLLFKQF VQQQRPSLDI DAVATGEHWF GTQAKEKGLV DAIGTSDDLL 300
  301 IAEMDNHEVI GVRYSHRKRL IERFMGSATE SVDSLLLRWW QRGEKPLL

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.47
Transmembrane Helix	9	30	0.92
Cytoplasmic	31	184	0.51
Transmembrane Helix	185	204	0.37
Non-Cytoplasmic	205	348	0.78