YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229895106, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLNEPIKKV SIVIPVYNEQ ESLPALIDRT TAACKLLTQA YEIILVDDGS SDNSTELLTA  60
   61 AANDPDSHII AILLNRNYGQ HSAIMAGFNQ VSGDLIITLD ADLQNPPEET PRLVHVAEEG 120
  121 YDVVGTVRAN RQDSLFRKTA SRMINMMIQR ATGKSMGDYG CMLRAYRRHI VEAMLHCHER 180
  181 STFIPILANT FARRTTEITV HHAEREFGNS KYSLMRLINL MYDLITCLTT TPLRLLSLVG 240
  241 SAIALLGFTF SVLLVALRLI FGPEWAGGGV FTLFAVLFMF IGAQFVGMGL LGEYIGRIYN 300
  301 DVRARPRYFV QKVVGAEQTE NNQDVEK

Type	Start	End	Confidence
Cytoplasmic	1	237	0.79
Transmembrane Helix	238	261	0.86
Non-Cytoplasmic	262	268	0.62
Transmembrane Helix	269	292	0.85
Cytoplasmic	293	327	0.71