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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|38679443
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAHRWAVWA VLLLRLLVPA ARVLANMEGD ALHSLRTNLV DPNNVLQSWD PTLVNPCTWF  60
   61 HVTCNNDNSV IRVDLGNAAL SGTLVPQLGQ LKNLQYLELY SNNISGTIPS ELGNLTNLVS 120
  121 LDLYLNNFTG PIPDSLGNLL KLRFLRLNNN SLSGSIPKSL TAITALQVLD LSNNNLSGEV 180
  181 PYKHGFSLFT PISFANNPSL CGPGTTKPCP GAPPFSPPPP YNPPTPVQSP GSSSSTGAIA 240
  241 GGVAAGAALL FAIPAIGFAW YRRRKPQEHF FDVPAEEDPE VHLGQLKRFS LRELQVATDT 300
  301 FSNKNILGRG GFGKVYKGRL ADGSLVAVKR LKEERTPGGE LQFQTEVEMI SMAVHRNLLR 360
  361 LRGFCMTPTE RLLVYPYMAN GSVASRLRER PPSEPPLDWR TRRRIALGSA RGLSYLHDHC 420
  421 DPKIIHRDVK AANILLDEDF EAVVGDFGLA KLMDYKDTHV TTAVRGTIGH IAPEYLSTGK 480
  481 SSEKTDVFGY GIMLLELITG QRAFDLARLA NDDDVMLLDW VKGLLKEKRL EMLVDPDLQS 540
  541 NYIDVEVESL IQVALLCTQG SPTERPKMAE VVRMLEGDGL AERWEEWQKI EVVRQEVELG 600
  601 PHRNSEWIVD STDNLHAVEL SGPR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle