YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12707464
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEIFCTAIV VITILIVGVF VYMIIRTKKK KLKLDNMFYI NSKYKIDLDK IMTKMKNKSV  60
   61 INIDDVDDEE LLAILYTSKQ FEKILKNNED SKYLENKVFC SVFLEPSTRT RCSFDAAILK 120
  121 LGSKVLNITD MNSTSFYKGE TVEDAFKILS TYVDGIIYRD PSKKNVDIAV SSSSKPIINA 180
  181 GNGTGEHPTQ SLLDFYTIHN YFPFILDRNI NKKLNIAFVG DLKNGRTVHS LSKLLSRYNV 240
  241 SFNFVSCKSL NIPKDIVNTI TYNLKKNNFY SDDSIKYFDN LEEGLEDVHI IYMTRIQKER 300
  301 FTDVDEYNQY KNAFILSNKT LENTRDDTKI LHPLPRVNEI KVEVDSNPKS VYFTQAENGL 360
  361 YVRMALLYLI FSSTS

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.75
Transmembrane Helix	5	25	0.92
Cytoplasmic	26	375	0.79